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Bioperl Alignment conversion issue
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I am having an issue converting between alignment types when readng from STDIN and printing to STDOUT.
I am running my program from the command line using like this: ./bio.pl fasta mega < rpoBFixed.fasta
I am getting this output: --------------------- WARNING --------------------- MSG: Must provide a Bio::Align::AlignI object when calling write_aln
Here is the github rep link with my code and a sample alignment file in fasta format.
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